Software requirements for advanced mixOmics workshop

We list below some installation requirements to ensure the mixOmics workshop will run smoothly for everyone. Please update / install prior to the workshop to avoid a WIFI (eduroam) backload.

Software installation and updates. The latest version of mixOmics 6.3.2 is now on CRAN following the latest R 3.5 update. You do not need to update your R version as long as you are >3.4.

  • mixOmics 6.3.2
  • reshape

The mixOmics package should directly import the following packages: igraph, rgl, ellipse, corpcor, RColorBrewer, plyr, parallel, dplyr, tidyr, reshape2, methods , matrixStats , rARPACK, gridExtra .

Check after install that the following does not throw any error* and that the welcome message confirms you have installed version 3.2:

>library(mixOmics)
Loaded mixOmics 6.3.2
Thank you for using mixOmics!
How to apply our methods: http://www.mixOmics.org for some examples.
Questions or comments: email us at mixomics[at]math.univ-toulouse.fr  
Any bugs? https://bitbucket.org/klecao/package-mixomics/issues
Cite us:  citation('mixOmics')

We also advise to use the software RStudio

*For apple mac users, if you are unable to install the mixOmics imported library rgl, you will need to install the XQuartz software first then reinstall mixOmics.

Wifi will be available on site, but it is preferable that you make those installations before the workshop to avoid delays for the analyses.

Any question regarding the requirements and software installation: email us at mixomics[at]math.univ-toulouse.fr

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