Presentations

Talks related to mixOmics methods

2017

  • Lê Cao K.-A. Sydney cardiovascular symposium,  8 Dec, December. Multivariate methods for omics data integration (a 101 introduction to our DIABLO framework)  [slides]
  • Lê Cao K.-A. R ladies meetup, 22 Aug, Melbourne. How to analyze and combine multiple high-dimensional datasets? [slides][tutorials material]
  • Lê Cao K.-A. The Statistical Society of Australia VIC branch, 25 June, Melbourne. An introduction to our multivariate integrative frameworks and some thoughts as a developer of the mixOmics R package [slides][video]
  • Lê Cao K.-A. WEHI Postgraduate seminar series, 19 June, Melbourne, Australia. An introduction to multivariate methods in mixOmics with examples (invited speaker) [slides][video]
  • Lê Cao K.-A. 207 Falk Foundation International Symposium: Gut Microbiome and Mucosal or Systemic Dysfunction: Mechanisms, Clinical Manifestations and Interventions, 19-20 May, Brisbane, Australia. Introducing some statistical  challenges in microbiome data analysis and multivariate solutions (invited speaker) [slides]

2016

  • Lê Cao K.-A. University of Melbourne seminar series, 12 Oct, Mebourne, Australia. An introduction to our n- and p- integration frameworks (DIABLO and MINT) [slides]
  • Lê Cao K.-A. International plant proteomics world congress, 4-8 Sept, Bratislava, Slovaquia (keynote speaker)[slides]
  • Lê Cao K.-A.  Joint Statistical Meeting, American Statistical Association, Chicago, July 30-Aug 3 (invited speaker for topic contributed session:Challenges in Metagenomic Data Analysis: Reproducibility and Interpretability of Inferences on Microbial Community Composition and Dynamics)[slides]
  • Rohart F. JOBIM: Journées Ouvertes en Biologie, Informatique et Mathématiques, Lyon, June 28-30 (speaker)
  • Rohart F. 5eme rencontres R, Toulouse, June 22-24 (speaker)
  • Lê Cao K.-A.  Bioinformatics and Big Data workshop in Visualisation, Big Data, Art & Science Festival, Brisbane, Feb 19 (invited speaker)

2015

  • Bartolo F. Computational optimisation for mixOmics, the R package dedicated to ‘omics data integration. JOBIM: Journées Ouvertes en Biologie, Informatique et Mathématiques, Clermont Ferrand, July 6-9 2015 (poster).
  • Lê Cao K.-A. Netbio workshop: biological networks inference, Paris, France, Sept 29-30 (invited speaker)
  • Lê Cao K.-A. Introduction to multivariate statistics for highly dimensional data . Winter School in mathematical and computational biology, Brisbane, IMB, July 6-10 2015 (invited speaker and chairing session).

2014

  • Lê Cao K.-A. Multivariate models for dimension reduction and biomarker selection in omics data. 4th Essential Nutrient Workshop “Network analysis for systems nutrition research”, Rovereto, Italy, Sept 4-5 2014 (invited speaker).
  • Lê Cao K.-A. Multivariate models for dimension reduction and biomarker selection in omics data. Winter School in mathematical and computational biology, Brisbane, IMB, July 6-10 2014 (invited speaker and chairing session).
  • Lê Cao K.-A. Multivariate techniques for the integration of highly dimensional biological data sets. Institute of mathematical statistics Asia Pacific Rim meeting, Taiwan, June 29 – July 3 2014 (invited speaker and chairing session).

2013

  • Lê Cao K.-A. It is all about mixOmics!  (Séminaire bio-stat-math, Toulouse, Sept. 2013) [Presentation]
  • Lê Cao K.-A. Data integration of highly dimensional biological data sets with multivariate analysis. AMATA, Oct. 13-16, 2013, Gold Coast, Australia (keynote speaker).
  • Lê Cao K.-A. mixOmics: data integration of biological data sets. ECCB/ISMB, July 21-23, 2013, Berlin, Germany (invited speaker).
  • Lê Cao K.-A. Integration of longitudinal biological data sets. 45èmes Journées de Statistique, May 27-31, 2013, Toulouse, France (speaker).

2012

  • Lê Cao K.-A. Data integration for Next Generation Sequencing data and other high-throughput biotechnologies. Australasian Applied Statistics Conference, Dec. 3-7, 2012, Queenstown, New Zealand (keynote speaker).
  • Lê Cao K.-A., Gonzales, I., Dejean, S. mixOmics for the integration of highly dimensional biological data sets. Journées UseR ! July 2-4, 2012, Bordeaux, France (keynote speaker).
  • Lê Cao K.-A. Data integration of highly dimensional biological data sets with multivariate analysis. Australasian Applied Statistics Conference Dec. 2012,(keynote speaker) [Presentation]
  • Lê Cao K.-A. Unravelling `omics’ data with the mixOmics R package, Illustration on several studies. General presentation on mixOmics (last updated 05/04/2012) [Presentation]
  • S. Déjean. Le package mixOmics pour l’intégration de données omiques. . Groupe de travail Statomique, 15 mai 2012. [Presentation]

2011

  • González I., Lê Cao K.-A. and Déjean S. mixOmics: an R package for the integration of ‘omics’ data.Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM), Institut Pasteur, Paris, 28 June – 1th July, 2011. [Abstract – Poster]
  • Lê Cao K.-A. and Coquery J. Using the mixOmics web interface for data integration. Winter School workshop, Institute for Molecular Bioscience, Brisbane, July 5, 2011. [Poster]
  • Lê Cao K.-A. Recent developments in exploratory and integrative multivariate approaches for ‘omics’ data. Application to a kidney transplant study. Biometrics Australasian Region Conference, Dec. 4-8, 2011, Kiama, Australia (speaker).

2010

  • Lê Cao K.-A. Unravelling ‘omics’ data with sparse PLS. XXVth International Biometric Conference, Dec. 5-11, 2010, Florianopolis, Brazil (invited speaker).
  • Lê Cao K.-A.  mixOmics for integration and variable selection of ‘omics’ data. Australasian Microarray and Associated Technologies Association Conference, Sept. 14-17, 2010, Hobart, Tasmania (speaker).
  • Lê Cao K.-A.  sparse PLS extensions for integration and variable selection. Research Workshop Series on Partial Least Squares Developments, May 10-11, 2010, Paris, France (invited speaker).
  • Déjean S. and González I. Le package mixOmics pour l’intégration de données ‘omiques’. Séminaire de la plate-forme de biostatisique, Université Paul Sabatier, Toulouse, 23 novembre 2010. [Slides]
  • Lê Cao K.-A. mixOmics: mix and match your data to select correlated feature profiles. Genomics and Computational Biology Divisional Seminar, Institute for Molecular Biology, Brisbane, Australia 28 October, 2010. [Abstract – Slides]
  • Lê Cao K.-A. mixOmics for integration and variable selection of ‘omics’ data. AMATA 2010 Conference,Tasmania 14 – 17 September, 2010. [Abstract – Slides]
  • Lê Cao K.-A. Sparse PLS extensions for integration and variable selection: Application to high throughput biological data . Research Workshop Series on PLS Developments, invited presentation, Paris, France, 10 – 11 May, 2010.(invited speaker)  [Slides]

2009

  • Déjean S., Gonzalez I. and Lê Cao K.-A. Extensions of CCA and PLS to unravel relationships between two data sets. The R User Conference, Rennes, 8-10 July, 2009. [Abstract – Slides]