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mixOmics
From Single to Multi-Omics Data Integration
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The mixOmics package
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Who uses mixOmics?
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FAQ
Glossary
Common Issues and Errors
Methods
Preprocessing
Missing Values
Multilevel
Performance assessment and parameter tuning
Parameter Tuning
Performance Assessment
Distance Metrics
Single Omics
(s)PCA
(s)IPCA
(s)PLS-DA
N-Integration – two omics
(s)PLS
(r)CCA
N-Integration – multi-Omics
Multi-Omics N-Integration Methods
DIABLO
Multiblock (s)PLS
P-integration
MINT
mixMC
mixMC Preprocessing
mixMC Methodology
Plots
Sample Plots
plotIndiv()
plotArrow()
Variable Plots
plotVar()
biplot()
plotLoadings()
network()
cim()
circos()
Case Studies
Single Omics
sPCA Multidrug Case Study
sPLSDA SRBCT Case Study
sIPCA Liver Toxicity Case Study
N-Integration – two omics
sPLS Liver Toxicity Case Study
rCCA Nutrimouse Case Study
N-Integration – multi-Omics
DIABLO TCGA Case Study
More DIABLO Examples
Multiblock sPLS Gastrulation (Single Cell) Case Study
P-integration
MINT Stem Cells Case Study
MINT Microbial Case Study
mixMC
Koren Bodysites Case Study
HMP Bodysites Case Study
mixMC/mixKernel Tara Ocean Case Study
Multilevel
Multilevel Vac18 Case Study
Multilevel Liver Toxicity Case Study
Cases where the methods fail
SRBCT sPLS-DA Case Study (Permuted Labels)
Gastrulation Multiblock sPLS Case Study (Inappropriate data)
About
Citing mixOmics
The mixOmics team
Collaborations
Acknowledgements
Contact us
Liu et al 2015
Liu et al 2015
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Published in
12-14 Sept 2016, Toulouse, FR (COST)