Skip to content
mixOmics
From Single to Multi-Omics Data Integration
Menu
Getting Started
The mixOmics package
Install
Selecting your Method
News
Workshops
Resources
Webinars
Forum
Book
Bookdown
FAQ
Glossary
Common Issues and Errors
Publications
Methods
Preprocessing
Missing Values
Multilevel
Performance assessment and parameter tuning
Parameter Tuning
Performance Assessment
Distance Metrics
Single Omics
(s)PCA
(s)IPCA
(s)PLS-DA
N-Integration – two omics
(s)PLS
(r)CCA
N-Integration – multi-Omics
Multi-Omics N-Integration Methods
Multiblock (s)PLS
DIABLO
P-integration
MINT
mixMC
mixMC Preprocessing
mixMC Methodology
Plots
Sample Plots
plotIndiv()
plotArrow()
Variable Plots
plotVar()
biplot()
plotLoadings()
network()
cim()
circos()
Case Studies
Single Omics
sPCA Multidrug Case Study
sPLSDA SRBCT Case Study
sIPCA Liver Toxicity Case Study
N-Integration – two omics
sPLS Liver Toxicity Case Study
rCCA Nutrimouse Case Study
N-Integration – multi-Omics
DIABLO TCGA Case Study
Multiblock sPLS Gastrulation (Single Cell) Case Study
More DIABLO Examples
P-integration
MINT Stem Cells Case Study
MINT Microbial Case Study
mixMC
Koren Bodysites Case Study
HMP Bodysites Case Study
mixMC/mixKernel Tara Ocean Case Study
Multilevel
Multilevel Vac18 Case Study
Multilevel Liver Toxicity Case Study
Cases where the methods fail
Gastrulation Multiblock sPLS Case Study (Inappropriate data)
SRBCT sPLS-DA Case Study (Permuted Labels)
About
Citing mixOmics
The Team
Acknowledgements
Contact us
Next Image
IPS2-2018
Post navigation
Published in
June 7-8 June 2018, Saclay, FR (advanced)