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mixOmics

mixOmics

| Omics Data Integration Project

  • Getting Started
    • The mixOmics package
    • Install
    • Selecting your Method
  • Updates
  • mixOmics Methods
    • Key Concepts
      • Distance Metrics
      • Multilevel
      • Missing Values
    • Single Omics
      • (s)PCA
      • (s)IPCA
      • (s)PLS-DA
    • N-Integration
      • Two-Omics
        • (s)PLS
        • (r)CCA
      • Multi-Omics
        • Multi-Omics N-Integration Methods
        • DIABLO
        • Multiblock (s)PLS
    • P-integration
      • MINT
    • mixMC
      • mixMC Preprocessing
      • mixMC Methodology
  • mixOmics plotting
    • Sample Plots
      • plotIndiv()
      • plotArrow()
    • Variable Plots
      • plotVar()
      • biplot()
      • plotLoadings()
      • network()
      • cim()
      • circos()
  • Case Studies
    • Single Omics
      • sPCA Multidrug Case Study
      • sPLSDA SRBCT Case Study
      • sIPCA Liver Toxicity Case Study
    • N-Integration
      • Two-Omics
        • sPLS Liver Toxicity Case Study
        • rCCA Nutrimouse Case Study
      • Multi-Omics
        • DIABLO TCGA Case Study
        • Multiblock sPLS Gastrulation (Single Cell) Case Study
        • More DIABLO Examples
    • P-integration
      • MINT Stem Cells Case Study
      • MINT Microbial Case Study
    • mixMC
      • Koren Bodysites Case Study
      • HMP Bodysites Case Study
      • mixMC/mixKernel Tara Ocean Case Study
    • Multilevel
      • Multilevel Vac18 Case Study
      • Multilevel Liver Toxicity Case Study
    • Cases where the methods fail
      • Gastrulation Multiblock sPLS Case Study (Inappropriate data)
      • SRBCT sPLS-DA Case Study (Permuted Labels)
  • FAQ
    • Glossary
    • Common Issues and Errors
  • About
    • Citing mixOmics
    • The Team
    • Acknowledgements
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Recent Posts

  • Webinar: PLS methods
  • Webinar: Time-course multi-omics integration
  • [open] Self-paced online course Feb 24 – April 11, 2025
  • Webinar: Φ-Space for continuous phenotyping of single-cell multi-omics data
  • Webinar: PCA and PLS-DA
  • Getting Started
    • The mixOmics package
    • Install
    • Selecting your Method
  • Updates
  • mixOmics Methods
    • Key Concepts
      • Distance Metrics
      • Multilevel
      • Missing Values
    • Single Omics
      • (s)PCA
      • (s)IPCA
      • (s)PLS-DA
    • N-Integration
      • Two-Omics
        • (s)PLS
        • (r)CCA
      • Multi-Omics
        • Multi-Omics N-Integration Methods
        • DIABLO
        • Multiblock (s)PLS
    • P-integration
      • MINT
    • mixMC
      • mixMC Preprocessing
      • mixMC Methodology
  • mixOmics plotting
    • Sample Plots
      • plotIndiv()
      • plotArrow()
    • Variable Plots
      • plotVar()
      • biplot()
      • plotLoadings()
      • network()
      • cim()
      • circos()
  • Case Studies
    • Single Omics
      • sPCA Multidrug Case Study
      • sPLSDA SRBCT Case Study
      • sIPCA Liver Toxicity Case Study
    • N-Integration
      • Two-Omics
        • sPLS Liver Toxicity Case Study
        • rCCA Nutrimouse Case Study
      • Multi-Omics
        • DIABLO TCGA Case Study
        • Multiblock sPLS Gastrulation (Single Cell) Case Study
        • More DIABLO Examples
    • P-integration
      • MINT Stem Cells Case Study
      • MINT Microbial Case Study
    • mixMC
      • Koren Bodysites Case Study
      • HMP Bodysites Case Study
      • mixMC/mixKernel Tara Ocean Case Study
    • Multilevel
      • Multilevel Vac18 Case Study
      • Multilevel Liver Toxicity Case Study
    • Cases where the methods fail
      • Gastrulation Multiblock sPLS Case Study (Inappropriate data)
      • SRBCT sPLS-DA Case Study (Permuted Labels)
  • FAQ
    • Glossary
    • Common Issues and Errors
  • About
    • Citing mixOmics
    • The Team
    • Acknowledgements
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