cim()

Case Studies

Refer to the following case studies for a more in depth look at generating and interpreting the output of the cim() function:

• rCCA – Nutrimouse
• sPLS – Liver Toxicity
• sPLS-DA – SRBCT
• Multilevel – Vac18
• N-Integration – TCGA – Specifically the cimDiablo() function is utilised here.
• P-Integration – Stem cells

References

• 1. González I., Lê Cao K.-A., Davis, M.D. and Déjean S. (2013) Insightful graphical outputs to explore relationships between two ‘omics’ data sets. BioData Mining 5:19