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mixOmics
From Single to Multi-Omics Data Integration
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Getting Started
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The mixOmics package
Install
Selecting your Method
News
Workshops
Resources
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Webinars
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FAQ
Glossary
Common Issues and Errors
Publications
Methods
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Preprocessing
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Missing Values
Multilevel
Performance assessment and parameter tuning
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Parameter Tuning
Performance Assessment
Distance Metrics
Single Omics
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(s)PCA
(s)IPCA
(s)PLS-DA
N-Integration – two omics
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(s)PLS
(r)CCA
N-Integration – multi-Omics
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Multi-Omics N-Integration Methods
Multiblock (s)PLS
DIABLO
P-integration
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MINT
mixMC
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mixMC Preprocessing
mixMC Methodology
Plots
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Sample Plots
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plotIndiv()
plotArrow()
Variable Plots
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plotVar()
biplot()
plotLoadings()
network()
cim()
circos()
Case Studies
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Single Omics
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sPCA Multidrug Case Study
sPLSDA SRBCT Case Study
sIPCA Liver Toxicity Case Study
N-Integration – two omics
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sPLS Liver Toxicity Case Study
rCCA Nutrimouse Case Study
N-Integration – multi-Omics
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Multiblock sPLS Gastrulation (Single Cell) Case Study
DIABLO TCGA Case Study
More DIABLO Examples
P-integration
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MINT Stem Cells Case Study
MINT Microbial Case Study
mixMC
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Koren Bodysites Case Study
HMP Bodysites Case Study
mixMC/mixKernel Tara Ocean Case Study
Multilevel
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Multilevel Vac18 Case Study
Multilevel Liver Toxicity Case Study
Cases where the methods fail
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Gastrulation Multiblock sPLS Case Study (Inappropriate data)
SRBCT sPLS-DA Case Study (Permuted Labels)
About
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Citing mixOmics
The mixOmics team
Acknowledgements
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