We are preparing a patch to fix some small bugs we (and other users) noticed since we released version 6.0.0. The .zip (windows) and .tar.gz (linux / mac) can be downloaded from this page. We plan to push a completed patch on the CRAN end of august 2016.
Latest patch update: 18 August
Package to download: mixOmics_6.0.1.zip (windows) or mixOmics_6.0.1.tar.gz (linux, mac)
For the .tar.gz you can install it via RStudio (mac environment) alternatively, type in a terminal (linux environment):
R CMD INSTALL mixOmicsPatch_6.0.1.tar.gz
Then load the patch version in R:
#Load the patch library(mixOmics)
Bugs fixed:
Date: 18/08/2016
- Offset value of 1 added for CLR log transform for mixMC
- circosPlot variable name fixed for mixDIABLO, new argument size.variables
- cimDiablo and circosPlot match name to legend color for mixDIABLO, new arguments transpose, row.names and col.names
Date: 03/08/2016
- Call to plsda.vip() from the RVAideMemoire package
- Speed up computations for PCA with logratio transformation
- perf / tune for sPLS-DA with log ratio transformation (that will improve the performance of the model)
- network function for block.spls models (still in development!)