-
Recent Posts
Recent Comments
Archives
- October 2023
- March 2023
- January 2023
- August 2022
- November 2021
- September 2021
- June 2021
- May 2021
- March 2020
- September 2019
- April 2019
- February 2019
- January 2019
- October 2018
- June 2018
- April 2018
- March 2018
- February 2018
- November 2017
- October 2017
- September 2017
- August 2017
- June 2017
- May 2017
- February 2017
- October 2016
- September 2016
- August 2016
- July 2016
- June 2016
- May 2016
- March 2016
- November 2015
- September 2015
- August 2015
- July 2015
- May 2015
- April 2015
- November 2014
- October 2014
- September 2014
- August 2014
- June 2014
- October 2013
- February 2013
- May 2012
- April 2012
- August 2011
- June 2011
- March 2011
- November 2010
- September 2010
- August 2010
- May 2010
- December 2009
Categories
Meta
Author Archives: lecao
New publication with multiple integration
Our paper ‘Novel Multivariate Methods for Integration of Genomics and Proteomics Data: Applications in a Kidney Transplant Rejection Study‘ has just been accepted in OMICS: a journal of integrative Biology, from a collaboration with scientists from the PRevention Of Organ Failure … Continue reading
6-7 October 2014, Toulouse, FR
We ran our second tutorial in Toulouse, hosted by the National Institute for Agricultural Research (INRA) and organised by the Plate-formes bio-statistique and bio-informatique GenoToul.
Sept 7, 2014, Strasbourg, FR
We ran our first mixOmics tutorial as part of the ECCB’14 conference in the beautiful city of Strasbourg. This one-day tutorial was a success and will be followed by other tutorials in 2014 and 2015. We will run a two … Continue reading
perf() function tutorial
The old function valid() has been superseded by the perf() function. The update of the website is on its way, in the meantime, please download the following file: Running_perf_function4.
Posted in News
Leave a comment
mixOmics 5.0-2 update
The major changes of this new update is the perf() function that supersedes valid() and offers a variable stability measure across the different folds. The pls() and spls() functions have been modified and are now following the same framework coding. … Continue reading
ECCB’14 Tutorial on mixOmics
ECCB Tutorial T04. Multivariate methodologies for the exploration of large biological data sets. Application in R using the mixOmics package Date: Sunday Sept 7, 2014 Venue: FORUM building, Faculté de Médecine, 4, rue Kirschleger, Strasbourg Time: 9am – 5.30pm (registration starts … Continue reading
Version 4.1-3 is on CRAN now
Changes in 4.1 ================ New features: ————- – New S3 method valid for objects of class psl, spls, plsda and splsda – New select.var function to directly extract the selected variables from spls, spca, sipca – New data set vac18 … Continue reading
Posted in News
Comments Off on Version 4.1-3 is on CRAN now
Article published explaining correlation circle plots, relevance networks and CIM
Our manuscript ‘Insightful graphicalt outputs to explore relationships between two “omics” data sets has been published and explains how to interpret Correlation Circle plots, how relevance networks and CIM are generated from rCCA and sPLS. Check this very colourful manuscript[intlink … Continue reading
Posted in Case Studies, Graphics, News, Publications, Research
Comments Off on Article published explaining correlation circle plots, relevance networks and CIM
Another presentation about mixOmics
Another general presentation of mixOmics dating Dec 2012, which presents some preliminary but exciting results about time course data and the generalisation of PLS to multi block data sets using the approach of our collaborator Arthur Tenenhaus and colleagues. Go[intlink … Continue reading
Posted in News, Publications, Research
Tagged multi block, time course
Comments Off on Another presentation about mixOmics
General presentation about mixOmics
A new general presentation about mixOmics is available (and should be updated for major update of the package) in the [intlink id=”204″ type=”page”]Presentation Section[/intlink]. Lê Cao K.-A. Unravelling `omics’ data with the mixOmics R package, Illustration on several studies. General presentation on mixOmics … Continue reading
Posted in Case Studies, Graphics, Methods, News, Publications, Research
Comments Off on General presentation about mixOmics